Well this should start a somewhat contentious thread!
In reading my comments, keep in mind (firmly!) that I am an organist, first, and only lately (since I retired) a pianist -- and that I learned Bach on the organ, not on the piano.
On using the sustain pedal. Of course, Bach didn't have one. But does that mean that one shouldn't ever every use it? A related question -- might he have used it had he had one? Probably; he used pretty much every other resource of his instruments that he could find. So -- should it be used? I would expect so, but only very sparingly and only on certain pieces (that C Major prelude, if it's the same one I'm thinking of, is a potential example -- although the feel of it with and without pedal is quite different. Which is right? I won't even go there). My own feeling is that in more thoroughly contrapuntal music -- which is most of it -- probably only when one is absolutely desperate about a particular fingering.
In contrapuntal music all voices are independent. They may or may not, however, all be equal at any given moment. Unfortunately, Bach did not leave much in the way of notes on how to interpret most of his music, so it is -- again -- more a matter of informed judgement than hard and fast rules, never mind recreating what he and his contemporaries might have done. I usually did have all the voices equal at any given time in, say, most of the preludes and fugues -- but they would not have stayed the same throughout a piece; I would very commonly change registrations (it is possible to overdo this, though). Usually some thought and examination of the structure will suggest where each voice should change (commonly not all at the same place!). On chorales, however, I almost always gave the chorale tune itself a distinct registration -- not necessarily the same relative volume, but a distinct tone colour (say, for example, and 8/4 diapason for the chorale against perhaps an 8/2 flute for the other voices)(or whatever happened to appeal -- and be available on the instrument at hand).
On the piano, one doesn't have the option to change registration. Therefore, if at any given moment one wants to highlight a particular voice -- say the fugue subject, for example, or a cantus firmus -- one must do it entirely either by volume, which usually isn't that satisfactory, or preferably by slight (or sometimes not so slight) variations in legato/detache or other "tricks" (a very effective, if subtle, approach, for example, would be to play the fugue subject -- wherever it happens to come -- with a perfect legato, and the counter subject with, perhaps, a distinct detache, and other voices somewhere between the two)(note that if you do this, it can be double effective if you keep the treatment of the subject the same, whether it is normal, retrograde, inverted, or whatever -- a subtle hint to the listener, in case they aren't paying attention!).
Have fun!